PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.35HL5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 150aa    MW: 16920.1 Da    PI: 8.48
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.35HL5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08453248
                     SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48
                     + WT eE + +  +++         +W++Ia++++ g+t+ q+++r+ k++
      Aradu.35HL5  4 QVWTWEENKAFESVITNCFEYakrnSWELIAARLP-GKTPAQLQERFKKLM 53
                     68*************9875447779**********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.073153IPR017877Myb-like domain
SMARTSM007172.4E-6255IPR001005SANT/Myb domain
PfamPF002498.6E-6452IPR001005SANT/Myb domain
SuperFamilySSF466892.44E-8561IPR009057Homeodomain-like
CDDcd001675.92E-7653No hitNo description
Gene3DG3DSA:1.10.10.605.7E-81654IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MQPQVWTWEE NKAFESVITN CFEYAKRNSW ELIAARLPGK TPAQLQERFK KLMKDINVIH  60
NGYTSNTPLN TASENMTMIM AAPITTLEHN PVSVPIINAT TTTPPPPPYN TDHQHHRAEV  120
VAAAAPMEAA TREQSQSANT NNTKKYSRWT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941162.11e-106PREDICTED: uncharacterized protein LOC107466673
RefseqXP_015941217.11e-106PREDICTED: uncharacterized protein LOC107466722 isoform X3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1908424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-07MYB family protein